Publications

UPGRADE publications are available in Zenodo, in open access.

(in alphabetical order)

  1. Arc‐Chagnaud C., Salvador‐Pascual A., Garcia‐Dominguez E., Olaso‐Gonzalez G., Correas A. G., Serna E., Brioche T., Chopard A., Fernandez-Marcos P. J., Serrano M., Serrano A. L., Muñoz-Cánoves P., Sebastiá V., Viña J., Gomez‐Cabrera, M. C. (2021). Glucose 6‐P dehydrogenase delays the onset of frailty by protecting against muscle damage. Journal of cachexia, sarcopenia and muscle, https://doi.org/10.1002/jcsm.12792 Open Access in Zenodo
  2. Campanario S., Ramírez-Pardo I., Hong X., Isern J., Muñoz-Cánoves P. (2021) Assessing Autophagy in Muscle Stem Cells. Frontiers in Cell and Developmental Biology, https://doi.org/10.3389/fcell.2020.620409 Open Access in Zenodo
  3. Chen X., Yuan J., Xue G., Campanario S., Wang D., Wang W., Mou X., Liew S. W., Umar M. I.,; Isern J. (2021) Translational control by DHX36 binding to 5′UTR G-quadruplex is essential for muscle stem-cell regenerative functions. Nature Commiunications, https://doi.org/10.1038/s41467-021-25170-w Open Access in Zenodo 
  4. Dastidar S., Majumdar D., Tipanee J., Singh K., Klein A. F., Furling D., Chuah M. K., VandenDriessche, T. (2022). Comprehensive transcriptome-wide analysis of spliceopathy correction of myotonic dystrophy using CRISPR-Cas9 in iPSCs-derived cardiomyocytes. Molecular Therapy, https://doi.org/10.1016/j.ymthe.2021.08.004 Open Access in Zenodo
  5. Dell’Orso S., Juan A. H., Moiseeva V., Garcia-Prat L., Munoz-Canoves P., Sartorelli V. (2021) Protocol for RNA-seq library preparation starting from a rare muscle stem cell population or a limited number of mouse embryonic stem cells. Star Protocols, https://doi.org/10.1016/j.xpro.2021.100451 Open Access in Zenodo
  6. Ferrari S., Beretta S., Jacob A., Cittaro D., Albano L., Merelli I., Naldini L., Genovese P. (2021) BAR-Seq clonal tracking of gene-edited cells. Nature Protocols, https://doi.org/10.1038/s41596-021-00529-x Open Access in Zenodo
  7. Ferrari S., Jacob A., Beretta S., Unali G., Albano L., Vavassori V., Cittaro D., Lazarevic D., Brombin C., Cugnata F., Kajaste-Rudnitski A., Merellli I., Genovese P., Naldini L. (2020) Efficient gene editing of human long-term hematopoietic stem cells validated by clonal tracking. Nature Biotechnology, https://doi.org/10.1038/s41587-020-0551-y
  8. Ferrari S., Vavassori V., Canarutto D., Jacob A., Castiello M. C., Javed A. O., Genovese, P. (2021) Gene Editing of Hematopoietic Stem Cells: Hopes and Hurdles Toward Clinical Translation. Frontiers in Genome Editing, https://doi.org/10.3389/fgeed.2021.618378 Open Access in Zenodo
  9. Freitag F., Wagner E. (2020). Optimizing synthetic nucleic acid and protein nanocarriers: The chemical evolution approach. Advanced Drug Delivery Reviews, https://doi.org/10.1016/j.addr.2020.03.005. Open Access in Zenodo
  10. García-Prat L., Perdiguero E., Alonso-Martín S., Dell’Orso S., Ravichandran S., Brooks S. R., Juan A. H., Campanario S., Jiang K., Hong X., et al. (2020) FoxO maintains a genuine muscle stem-cell quiescent state until geriatric age. Nature Cell Biology, https://doi.org/10.1038/s41556-020-00593-7 Open Access in Zenodo 
  11. González-Hernández S., Gómez M. J., Sánchez-Cabo F., Méndez-Ferrer S., Muñoz-Cánoves P., Isern J. (2020) Sox17 Controls Emergence and Remodeling of Nestin-Expressing Coronary Vessels. Circulation Research https://doi.org/10.1161/CIRCRESAHA.120.317121 Open Access in Zenodo
  12. Greco C. M., Koronowski K. B., Smith J. G., Shi J., Kunderfranco P., Carriero R., Chen S., Samad M., Welz P.-S., Zinna V. M., et al. (2021) Integration of feeding behavior by the liver circadian clock reveals network dependency of metabolic rhythms. Science Advances https://doi.org/10.1126/sciadv.abi7828 Open Access in Zenodo
  13. Iavarone F., Guardiola O., Scagliola A., Andolfi G., Esposito F., Serrano A., Perdiguero E., Brunelli S., Muñoz‐Cánoves P., Minchiotti G. (2020) Cripto shapes macrophage plasticity and restricts EndMT in injured and diseased skeletal muscle. The EMBO reports, https://doi.org/10.15252/embr.201949075 Open Access in Zenodo
  14. Kuhn J., Lin Y., Krhac Levacic A., Al Danaf N., Peng L., Höhn M., Lamb D.C., Wagner E., Lächelt U. (2020). Delivery of Cas9/sgRNA Ribonucleoprotein Complexes via Hydroxystearyl Oligoamino Amides. Bioconjugate Chemistry,  https://doi.org/10.1021/acs.bioconjchem.9b00853. Open Access in Zenodo
  15. Lansing F., Mukhametzyanova L., Rojo-Romanos T., Iwasawa K., Kimura M., Paszkowski-Rogacz M., Karpinski J., Grass T., Sonntag J., Schneider P. M., Günes C., Hoersten J., Schmitt L. T., Rodriguez-Muela N., Knöfler R., Takebe T., Buchholz, F. (2022). Correction of a Factor VIII genomic inversion with designer-recombinases. Nature Communications, https://doi.org/10.1038/s41467-022-28080-7. Open Access in Zenodo
  16. Lansing F., Paszkowski-Rogacz M., Schmitt L. T., Schneider P. M., Romanos T. R., Sonntag J., Buchholz F.(2020). A heterodimer of evolved designer-recombinases precisely excises a human genomic DNA locus. Nucleic Acids Research, https://doi.org/10.1093/nar/gkz1078. Open Access in Zenodo
  17. Mashinchian O., Hong X., Migliavacca E., Boss C., De Franceschi F., Michaud J., Le Moal E., Collerette-Tremblay J., Isern J., Metairon S., Raymond F., Descombes P., Bouche N., Muñoz-Cánoves P., Feige J.N., Bentzinger C.F. (2021) In-vivo Transcriptomic Profiling of Systemic Aging using Cell Encapsulation. BiorXiv https://doi.org/10.1101/2020.03.09.979054 Open Access in Zenodo
  18. Maule G., Arosio D., Cereseto A. (2020) Gene Therapy for Cystic Fibrosis: Progress and Challenges of Genome Editing. International Journal of Molecular Science https://doi.org/10.3390/ijms21113903 Open Access in Zenodo
  19. Muñoz‐Cánoves P., Neves J., Sousa‐Victor P.(2020) Understanding muscle regenerative decline with aging: new approaches to bring back youthfulness to aged stem cells. The FEBS Journal, https://doi.org/10.1111/febs.15182 Open Access in Zenodo
  20. Nicolás-Ávila J. Á., Lechuga-Vieco A. V., Esteban-Martínez L., Sánchez-Díaz M., Díaz-García E., Santiago D. J., Rubio-Ponce A., LiangYao Li J., Balachander A., Quintana J. A., et al. (2020) A Network of Macrophages Supports Mitochondrial Homeostasis in the Heart. Cell https://doi.org/10.1016/j.cell.2020.08.031 Open Access in Zenodo
  21. Pallarès-Masmitjà M., Ivančić D., Mir-Pedrol J., Jaraba-Wallace J., Tagliani T., Oliva B., Rahmeh A., Sánchez-Mejías A., Güell M. (2021). Find and cut-and-transfer (FiCAT) mammalian genome engineering. Nature communications https://doi.org/10.1038/s41467-021-27183-x Open Access in Zenodo
  22. Perdiguero E., Moiseeva V., Munoz-Canoves P. (2019). Simultaneous Isolation of Stem and Niche Cells of Skeletal Muscle: Applicability for Aging Studies. Stem Cells and Aging, https://doi.org/10.1007/7651_2019_210 Open Access in Zenodo
  23. Potapov I., García-Prat L., Ravichandran S., Muñoz-Cánoves P., del Sol A. (2021) Computational modelling of stem cell–niche interactions facilitates discovery of strategies to enhance tissue regeneration and counteract ageing. The FEBS Journal https://doi.org/10.1111/febs.15832 Open Access in Zenodo
  24. Segalés J., Perdiguero E., Serrano A. L., Sousa-Victor P., Ortet L., Jardí M., Budanov A. V., Garcia-Prat L., Sandri M., Thomson D. M., Karin M., Lee J. H., Muñoz-Cánoves P. (2020) Sestrin prevents atrophy of disused and aging muscles by integrating anabolic and catabolic signals. Nature Communications, https://doi.org/10.1038/s41467-019-13832-9 Open Access in Zenodo
  25. Soni A., Augsburg M., Buchholz F., Pisabarro M.T. (2020) Nearest-neighbor amino acids of specificity-determining residues influence the activity of engineered Cre-type recombinases. Scientific Reports, https://doi.org/10.1038/s41598-020-70867-5 Open Access in Zenodo
  26. Sousa-Victor P., Neves J., Muñoz-Cánoves P. (2020) Muscle stem cell aging: identifying ways to induce tissue rejuvenation. Mechanisms of Ageing and Development, https://doi.org/10.1016/j.mad.2020.111246 Open Access in Zenodo
  27. Sreenivasan K., Ianni A., Künne C., Strilic B., Günther S., Perdiguero E., Krüger M., Spuler S., Offermanns S., Gómez-del Arco P., Redondo J. M., Munoz-Canoves P., Kim J., Braun T. (2020) Attenuated Epigenetic Suppression of Muscle Stem Cell Necroptosis Is Required for Efficient Regeneration of Dystrophic Muscles. Cell Reports, https://doi.org/10.1016/j.celrep.2020.107652 Open Access in Zenodo
  28. Sreenivasan K., Rodríguez-dela Rosa A., Johnny K., Mesquita D., Segalés J., Gomez-del Arco P., Espejo I., Ianni A., Di Croce L., Relaix F., et al. (2021) CHD4 ensures stem cell lineage fidelity during skeletal muscle regeneration. Stem Cell Reports https://doi.org/10.1016/j.stemcr.2021.07.022 Open Access in Zenodo
  29. Sürün D., Schneider A., Mircetic J., Neumann K., Lansing F., Paszkowski-Rogacz M., Hänchen V., Lee-Kirsch M.A., Buchholz F. (2020) Efficient Generation and Correction of Mutations in Human iPS Cells Utilizing mRNAs of CRISPR Base Editors and Prime Editors. Genes,  https://doi.org/10.3390/genes11050511 Open Access in Zenodo
  30. Trapani I., Auricchio A. (2019) Has retinal gene therapy come of age? From bench to bedside and back to bench. Human Molecular Genetics, https://doi.org/10.1093/hmg/ddz130 Open Access in Zenodo
  31. Uvizi A., Goswami R., Gandhi S. D., Augsburg M., Buchholz F., Guck J., Mansfeld J., Girardo S. (2021) Efficient and gentle delivery of molecules into cells with different elasticity via Progressive Mechanoporation. Lab on a Chip https://doi.org/10.1039/D0LC01224F Open Access in Zenodo
  32. Vandamme C., Xicluna R., Hesnard L., Devaux M., Jaulin N., Guilbaud M., Le Duff J., Couzinié C., Moullier P., Saulquin X., Adjali O.  (2020) Tetramer-Based Enrichment of Preexisting Anti-AAV8 CD8+ T Cells in Human Donors Allows the Detection of a TEMRA Subpopulation. Frontiers in Immunology, https://doi.org/10.3389/fimmu.2019.03110 Open Access in Zenodo
  33. Vavassori V., Mercuri E., Marcovecchio G. E., Castiello M. C., Schiroli G., Albano L., Margulies C., Buquicchio F., Fontana E., Beretta S., et al. (2021) Modeling, optimization, and comparable efficacy of T cell and hematopoietic stem cell gene editing for treating hyper-IgM syndrome. EMBO Molecular Medicine https://doi.org/10.15252/emmm.202013545 Open Access in Zenodo